Variant report

Variant	rs28489766
Chromosome Location	chr4:31053949-31053950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10003118	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11941802	0.84[AFR][1000 genomes]
rs28495143	1.00[AFR][1000 genomes]
rs28640086	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28668569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28696010	0.84[AFR][1000 genomes]
rs28719509	0.80[AFR][1000 genomes]
rs28738802	1.00[AFR][1000 genomes]
rs6840381	0.84[AFR][1000 genomes]
rs73113500	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31050200-31057600	Weak transcription	Aorta	Aorta
2	chr4:31052400-31054000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:31052400-31054600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:31052800-31054000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:31052800-31054000	Enhancers	HUVEC	blood vessel
6	chr4:31052800-31054200	Enhancers	Fetal Heart	heart
7	chr4:31053600-31054000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:31053600-31054000	Enhancers	Colon Smooth Muscle	Colon
9	chr4:31053600-31054200	Enhancers	Fetal Lung	lung
10	chr4:31053600-31055000	Enhancers	Brain Angular Gyrus	brain
11	chr4:31053800-31054200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr4:31053800-31055000	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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