Variant report

Variant	rs16884646
Chromosome Location	chr4:31237265-31237266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12650446	0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61795390	1.00[AFR][1000 genomes]
rs61795391	1.00[AFR][1000 genomes]
rs61795392	1.00[AFR][1000 genomes]
rs61795393	1.00[AFR][1000 genomes]
rs73219133	0.81[ASN][1000 genomes]
rs9986092	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv878812	chr4:31202669-31354090	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31236000-31238600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:31236200-31237600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:31236400-31237600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:31236400-31237800	Weak transcription	Fetal Intestine Large	intestine
5	chr4:31236600-31237800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:31236600-31237800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:31236800-31237600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:31236800-31237800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:31236800-31238200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:31236800-31238600	Weak transcription	NHEK	skin
11	chr4:31237200-31237600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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