Variant report
| Variant | rs61795391 |
|---|---|
| Chromosome Location | chr4:31168326-31168327 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11937565 | 0.81[EUR][1000 genomes] |
| rs11945187 | 0.81[EUR][1000 genomes] |
| rs12507539 | 0.81[EUR][1000 genomes] |
| rs16867997 | 0.81[EUR][1000 genomes] |
| rs16884372 | 0.81[EUR][1000 genomes] |
| rs16884388 | 0.81[EUR][1000 genomes] |
| rs16884426 | 0.89[EUR][1000 genomes] |
| rs16884646 | 1.00[AFR][1000 genomes] |
| rs17722635 | 0.98[ASN][1000 genomes] |
| rs28571701 | 0.81[EUR][1000 genomes] |
| rs56271018 | 0.81[EUR][1000 genomes] |
| rs61794131 | 0.83[EUR][1000 genomes] |
| rs61794134 | 0.83[EUR][1000 genomes] |
| rs61794135 | 0.83[EUR][1000 genomes] |
| rs61794136 | 0.89[EUR][1000 genomes] |
| rs61794138 | 0.89[EUR][1000 genomes] |
| rs61794141 | 0.89[EUR][1000 genomes] |
| rs61794142 | 0.89[EUR][1000 genomes] |
| rs61794143 | 0.89[EUR][1000 genomes] |
| rs61794144 | 0.89[EUR][1000 genomes] |
| rs61794145 | 0.89[EUR][1000 genomes] |
| rs61794146 | 0.89[EUR][1000 genomes] |
| rs61794147 | 0.89[EUR][1000 genomes] |
| rs61794148 | 0.89[EUR][1000 genomes] |
| rs61794149 | 0.89[EUR][1000 genomes] |
| rs61795382 | 0.89[EUR][1000 genomes] |
| rs61795383 | 0.94[EUR][1000 genomes] |
| rs61795384 | 0.89[EUR][1000 genomes] |
| rs61795385 | 0.89[EUR][1000 genomes] |
| rs61795386 | 0.89[EUR][1000 genomes] |
| rs61795387 | 0.89[EUR][1000 genomes] |
| rs61795388 | 0.89[EUR][1000 genomes] |
| rs61795390 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61795392 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61795393 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998450 | chr4:30823631-31628179 | Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007884 | chr4:31071934-31680623 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1007145 | chr4:31079681-31670541 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv491749 | chr4:31103307-31645668 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:31158400-31171600 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
| 2 | chr4:31166200-31171400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 3 | chr4:31167400-31171600 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
