Variant report

Variant	rs12507539
Chromosome Location	chr4:31135624-31135625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11937565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13133529	1.00[CEU][hapmap]
rs13151017	1.00[CEU][hapmap]
rs1532561	1.00[CEU][hapmap]
rs16867997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884361	1.00[CEU][hapmap]
rs16884372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884426	0.90[EUR][1000 genomes]
rs28571701	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56271018	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60159418	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61794131	0.85[EUR][1000 genomes]
rs61794133	0.81[EUR][1000 genomes]
rs61794134	0.85[EUR][1000 genomes]
rs61794135	0.85[EUR][1000 genomes]
rs61794136	0.90[EUR][1000 genomes]
rs61794138	0.90[EUR][1000 genomes]
rs61794141	0.90[EUR][1000 genomes]
rs61794142	0.90[EUR][1000 genomes]
rs61794143	0.90[EUR][1000 genomes]
rs61794144	0.90[EUR][1000 genomes]
rs61794145	0.90[EUR][1000 genomes]
rs61794146	0.90[EUR][1000 genomes]
rs61794147	0.90[EUR][1000 genomes]
rs61794148	0.90[EUR][1000 genomes]
rs61794149	0.90[EUR][1000 genomes]
rs61795382	0.90[EUR][1000 genomes]
rs61795383	0.85[EUR][1000 genomes]
rs61795384	0.90[EUR][1000 genomes]
rs61795385	0.90[EUR][1000 genomes]
rs61795386	0.90[EUR][1000 genomes]
rs61795387	0.90[EUR][1000 genomes]
rs61795388	0.90[EUR][1000 genomes]
rs61795390	0.81[EUR][1000 genomes]
rs61795391	0.81[EUR][1000 genomes]
rs61795392	0.81[EUR][1000 genomes]
rs61795393	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31116800-31144000	Weak transcription	Aorta	Aorta
2	chr4:31133000-31135800	Weak transcription	Left Ventricle	heart
3	chr4:31135000-31136200	Enhancers	Fetal Heart	heart
4	chr4:31135600-31140000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:31135600-31144400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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