Variant report

Variant	rs16884426
Chromosome Location	chr4:31146309-31146310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:31145390..31148497-chr4:31150587..31153361,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11937565	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11945187	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12507539	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13133529	1.00[CEU][hapmap]
rs13138590	0.82[CEU][hapmap]
rs13151017	1.00[CEU][hapmap]
rs1532561	1.00[CEU][hapmap]
rs16867997	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs16884361	1.00[CEU][hapmap]
rs16884372	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs16884388	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs28571701	0.90[EUR][1000 genomes]
rs56271018	0.90[EUR][1000 genomes]
rs61794131	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61794133	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61794134	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61794135	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61794136	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61794138	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61794141	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61794142	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61794143	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61794144	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61794145	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61794146	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61794147	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61794148	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61794149	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61795382	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61795383	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61795384	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61795385	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61795386	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61795387	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61795388	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61795390	0.89[EUR][1000 genomes]
rs61795391	0.89[EUR][1000 genomes]
rs61795392	0.89[EUR][1000 genomes]
rs61795393	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31135800-31147600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:31139800-31147600	Weak transcription	Right Ventricle	heart
3	chr4:31142000-31149600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:31142600-31147000	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:31142600-31147600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:31142600-31147600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:31142600-31150000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:31143000-31147000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:31143000-31150400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:31143000-31151800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:31143400-31147000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:31144000-31146600	Strong transcription	Fetal Lung	lung
13	chr4:31144000-31146600	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:31144200-31147600	Weak transcription	Fetal Intestine Small	intestine
15	chr4:31144400-31147000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:31144600-31147600	Weak transcription	Aorta	Aorta
17	chr4:31145400-31147400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:31145600-31154400	Weak transcription	Fetal Heart	heart
19	chr4:31145800-31147400	Weak transcription	Fetal Brain Female	brain
20	chr4:31146200-31146400	Enhancers	Stomach Mucosa	stomach
21	chr4:31146200-31148000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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