Variant report

Variant	rs13138590
Chromosome Location	chr4:30988943-30988944
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10517219	1.00[YRI][hapmap]
rs11945187	0.82[CEU][hapmap]
rs13111601	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13117081	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13133420	0.82[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13143186	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13143690	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16884361	0.82[CEU][hapmap]
rs16884388	0.82[CEU][hapmap]
rs28413974	0.81[ASN][1000 genomes]
rs28457098	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2871476	1.00[YRI][hapmap]
rs34145637	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34267891	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34455147	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34533457	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34746571	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35649307	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35856223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36002786	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4358358	1.00[YRI][hapmap]
rs4361347	1.00[YRI][hapmap]
rs4368569	1.00[YRI][hapmap]
rs4466008	1.00[YRI][hapmap]
rs4487300	1.00[YRI][hapmap]
rs4505781	0.84[EUR][1000 genomes]
rs4585258	1.00[YRI][hapmap]
rs4611883	1.00[YRI][hapmap]
rs4621392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4692490	1.00[YRI][hapmap]
rs61201051	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61792870	0.85[EUR][1000 genomes]
rs61792873	0.84[EUR][1000 genomes]
rs61792935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61792942	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61792944	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61792946	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61792947	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61792948	0.82[AMR][1000 genomes]
rs6812005	1.00[YRI][hapmap]
rs6847642	1.00[YRI][hapmap]
rs71598138	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7696734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9291553	1.00[YRI][hapmap]
rs9685207	1.00[YRI][hapmap]
rs9997529	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv878811	chr4:30987395-31019279	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30964600-30992600	Weak transcription	Aorta	Aorta
3	chr4:30982000-30998400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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