Variant report

Variant	rs61792870
Chromosome Location	chr4:30970929-30970930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13133420	0.85[EUR][1000 genomes]
rs13138590	0.85[EUR][1000 genomes]
rs34384535	0.82[AMR][1000 genomes]
rs34625421	1.00[AFR][1000 genomes]
rs34905305	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs35117412	0.82[AMR][1000 genomes]
rs35856223	0.85[EUR][1000 genomes]
rs36002786	0.82[EUR][1000 genomes]
rs4621392	0.85[EUR][1000 genomes]
rs61792935	0.85[EUR][1000 genomes]
rs61792949	0.84[EUR][1000 genomes]
rs61794533	1.00[AFR][1000 genomes]
rs61794534	1.00[AFR][1000 genomes]
rs61795875	1.00[AFR][1000 genomes]
rs71598132	1.00[AFR][1000 genomes]
rs71598134	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7696734	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30964600-30992600	Weak transcription	Aorta	Aorta
3	chr4:30967800-30976000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:30970000-30972200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:30970200-30971200	Enhancers	Brain Substantia Nigra	brain
6	chr4:30970200-30971200	Enhancers	Fetal Heart	heart
7	chr4:30970400-30971000	Enhancers	Brain Angular Gyrus	brain
8	chr4:30970400-30971000	Enhancers	Stomach Smooth Muscle	stomach
9	chr4:30970400-30971200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr4:30970400-30971200	Enhancers	Colon Smooth Muscle	Colon
11	chr4:30970400-30971800	Enhancers	Brain Hippocampus Middle	brain
12	chr4:30970600-30971000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:30970600-30971000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:30970600-30971200	Enhancers	Brain Anterior Caudate	brain
15	chr4:30970800-30971000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:30970800-30971200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:30970800-30971800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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