Variant report

Variant	rs61792873
Chromosome Location	chr4:30972322-30972323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13122707	0.84[ASN][1000 genomes]
rs13133420	0.84[EUR][1000 genomes]
rs13138590	0.84[EUR][1000 genomes]
rs34059778	0.82[ASN][1000 genomes]
rs34145637	0.85[ASN][1000 genomes]
rs34384535	0.97[ASN][1000 genomes]
rs35117412	0.95[ASN][1000 genomes]
rs35856223	0.84[EUR][1000 genomes]
rs36002786	0.81[EUR][1000 genomes]
rs4505781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4621392	0.84[EUR][1000 genomes]
rs61792872	0.81[ASN][1000 genomes]
rs61792935	0.84[EUR][1000 genomes]
rs61795887	0.85[ASN][1000 genomes]
rs6819579	0.92[ASN][1000 genomes]
rs7696734	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30964600-30992600	Weak transcription	Aorta	Aorta
3	chr4:30967800-30976000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:30971000-30972600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:30971000-30975200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:30971200-30976000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr4:30972200-30972600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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