Variant report

Variant	rs6819579
Chromosome Location	chr4:30959020-30959021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10008068	0.85[EUR][1000 genomes]
rs10010853	0.85[EUR][1000 genomes]
rs13112641	0.88[EUR][1000 genomes]
rs13122707	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16884201	0.85[EUR][1000 genomes]
rs28489161	0.88[EUR][1000 genomes]
rs28752062	0.88[EUR][1000 genomes]
rs34059778	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34145637	0.80[ASN][1000 genomes]
rs34170853	0.85[EUR][1000 genomes]
rs34384535	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35117412	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35235147	0.88[EUR][1000 genomes]
rs35554621	0.88[EUR][1000 genomes]
rs4505781	0.92[ASN][1000 genomes]
rs61792873	0.92[ASN][1000 genomes]
rs61795887	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71598132	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30953600-30964200	Weak transcription	Aorta	Aorta
3	chr4:30958800-30959200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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