Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10008068	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10010853	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13111601	0.87[CEU][hapmap]
rs13112641	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13122707	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13133420	0.88[CEU][hapmap]
rs13140818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28489161	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28752062	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34059778	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34170853	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34547954	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34625421	0.92[ASN][1000 genomes]
rs35235147	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35262065	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35554621	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61794533	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61794534	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61795887	0.91[EUR][1000 genomes]
rs6819579	0.85[EUR][1000 genomes]
rs71598132	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7696734	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:30855600-30867400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:30856200-30868600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:30857200-30868200	Weak transcription	Aorta	Aorta
6	chr4:30859400-30864200	Weak transcription	Fetal Lung	lung
7	chr4:30859800-30864200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:30860600-30864800	Weak transcription	Fetal Heart	heart
9	chr4:30861800-30868000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:30862600-30867400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:30862800-30870600	Enhancers	Colon Smooth Muscle	Colon
12	chr4:30863000-30864600	Weak transcription	HMEC	breast
13	chr4:30863000-30868800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:30863200-30864200	Weak transcription	NHEK	skin
15	chr4:30863200-30867800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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