Variant report

Variant	rs13111601
Chromosome Location	chr4:31019279-31019280
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11932290	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs13117081	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13133420	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13136231	0.87[CEU][hapmap]
rs13138590	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13140818	0.82[CEU][hapmap]
rs13143186	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13143690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13150677	1.00[CEU][hapmap]
rs13152102	1.00[CEU][hapmap]
rs16884201	0.87[CEU][hapmap]
rs28457098	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34145637	0.82[AMR][1000 genomes]
rs34267891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34455147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34533457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34746571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35131545	0.82[EUR][1000 genomes]
rs35649307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35856223	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36002786	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4621392	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61201051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61792935	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61792942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61792944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61792946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61792947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61792948	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61792949	0.85[EUR][1000 genomes]
rs71598138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7696734	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv878811	chr4:30987395-31019279	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31009400-31022000	Weak transcription	Fetal Stomach	stomach
2	chr4:31018600-31019600	Weak transcription	Fetal Heart	heart
3	chr4:31018600-31028200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:31019200-31022800	Weak transcription	Aorta	Aorta

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