Variant report

Variant	rs61792942
Chromosome Location	chr4:31024134-31024135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11932290	0.82[EUR][1000 genomes]
rs13111601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13117081	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13133420	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13138590	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13143186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13143690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28457098	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34145637	0.82[AMR][1000 genomes]
rs34267891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34455147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34533457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34746571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35131545	0.82[EUR][1000 genomes]
rs35649307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35856223	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36002786	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4621392	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61201051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61792935	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61792944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61792946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61792947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61792948	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61792949	0.85[EUR][1000 genomes]
rs71598138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7696734	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31018600-31028200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:31021400-31024400	Enhancers	Fetal Heart	heart
3	chr4:31021600-31024200	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:31022200-31024600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:31022400-31024200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:31023400-31024600	Weak transcription	Aorta	Aorta
7	chr4:31023400-31024600	Weak transcription	Right Ventricle	heart
8	chr4:31023400-31031200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:31024000-31024400	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links