Variant report
| Variant | rs28457098 |
|---|---|
| Chromosome Location | chr4:31000901-31000902 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs13108711 | 0.81[EUR][1000 genomes] |
| rs13111601 | 0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs13117081 | 0.96[EUR][1000 genomes] |
| rs13133420 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs13136231 | 0.81[EUR][1000 genomes] |
| rs13138590 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs13143186 | 0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13143690 | 0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs28413974 | 0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs28609713 | 0.81[AFR][1000 genomes] |
| rs34145637 | 0.83[EUR][1000 genomes] |
| rs34267891 | 0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs34455147 | 0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs34533457 | 0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs34746571 | 0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35649307 | 0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35856223 | 0.89[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs36002786 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4621392 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61201051 | 0.96[EUR][1000 genomes] |
| rs61792935 | 0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs61792942 | 0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61792944 | 0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs61792946 | 0.96[EUR][1000 genomes] |
| rs61792947 | 0.96[EUR][1000 genomes] |
| rs61792948 | 0.87[EUR][1000 genomes] |
| rs61792949 | 0.81[EUR][1000 genomes] |
| rs71598138 | 0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7696734 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv998450 | chr4:30823631-31628179 | Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv878811 | chr4:30987395-31019279 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:30998000-31018000 | Weak transcription | Aorta | Aorta |
