Variant report

Variant	rs35131545
Chromosome Location	chr4:31003941-31003942
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11932290	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108711	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13111601	0.82[EUR][1000 genomes]
rs13117081	0.82[EUR][1000 genomes]
rs13136231	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13143186	0.82[EUR][1000 genomes]
rs13143690	0.82[EUR][1000 genomes]
rs34267891	0.82[EUR][1000 genomes]
rs34455147	0.82[EUR][1000 genomes]
rs34533457	0.82[EUR][1000 genomes]
rs34746571	0.82[EUR][1000 genomes]
rs35649307	0.82[EUR][1000 genomes]
rs61201051	0.82[EUR][1000 genomes]
rs61792942	0.82[EUR][1000 genomes]
rs61792944	0.82[EUR][1000 genomes]
rs61792946	0.82[EUR][1000 genomes]
rs61792947	0.82[EUR][1000 genomes]
rs71598138	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv878811	chr4:30987395-31019279	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30998000-31018000	Weak transcription	Aorta	Aorta
2	chr4:31003600-31004200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:31003600-31004600	Enhancers	Fetal Heart	heart
4	chr4:31003800-31004200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:31003800-31004200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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