Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10008068	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10010853	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13122707	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13140818	0.91[ASN][1000 genomes]
rs16884201	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28489161	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28752062	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34059778	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34170853	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34547954	0.94[ASN][1000 genomes]
rs34625421	0.93[ASN][1000 genomes]
rs35117412	0.82[EUR][1000 genomes]
rs35235147	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35262065	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35554621	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61794533	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61794534	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61795887	0.94[EUR][1000 genomes]
rs6819579	0.88[EUR][1000 genomes]
rs71598132	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30868800-30886800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
3	chr4:30878000-30885400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:30879800-30893000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:30881800-30886400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:30883200-30899000	Weak transcription	Aorta	Aorta
7	chr4:30885000-30886200	Weak transcription	Fetal Heart	heart

Quick Search: