Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10008068	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10010853	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13112641	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13122707	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13140818	0.81[ASN][1000 genomes]
rs16884201	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28489161	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28752062	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34170853	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34384535	0.86[ASN][1000 genomes]
rs34547954	0.83[ASN][1000 genomes]
rs34625421	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs34905305	0.84[AMR][1000 genomes]
rs35117412	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35235147	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35262065	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35554621	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4505781	0.83[ASN][1000 genomes]
rs61792873	0.82[ASN][1000 genomes]
rs61794533	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61794534	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61795875	0.80[AMR][1000 genomes]
rs61795887	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6819579	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71598132	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30920600-30947400	Weak transcription	Fetal Stomach	stomach
3	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
4	chr4:30935200-30947400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:30938200-30945800	Enhancers	Fetal Intestine Small	intestine
6	chr4:30939600-30945000	Enhancers	Fetal Intestine Large	intestine
7	chr4:30941000-30944800	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:30941400-30944800	Weak transcription	Fetal Heart	heart
9	chr4:30941400-30944800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr4:30941600-30945000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:30941600-30945000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:30941600-30947200	Weak transcription	HMEC	breast
13	chr4:30941600-30951800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:30941800-30947200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:30941800-30947200	Weak transcription	Hela-S3	cervix
16	chr4:30941800-30947200	Weak transcription	NHEK	skin
17	chr4:30942400-30946800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:30943400-30947400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:30944600-30945000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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