Variant report

Variant	rs10008068
Chromosome Location	chr4:30868455-30868456
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30860982..30862636-chr4:30867110..30869327,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10010742	0.90[AFR][1000 genomes]
rs10010853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13112641	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13122707	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13140818	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16884201	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28489161	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28752062	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34059778	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34170853	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34547954	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34625421	0.95[ASN][1000 genomes]
rs35235147	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35262065	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35554621	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61794533	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61794534	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61795887	0.91[EUR][1000 genomes]
rs6819579	0.85[EUR][1000 genomes]
rs71598132	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:30856200-30868600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:30862800-30870600	Enhancers	Colon Smooth Muscle	Colon
5	chr4:30863000-30868800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:30863600-30868600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:30864200-30870000	Enhancers	Rectal Smooth Muscle	rectum
8	chr4:30864800-30870800	Enhancers	Fetal Heart	heart
9	chr4:30865200-30869200	Weak transcription	Ovary	ovary
10	chr4:30865200-30870400	Weak transcription	Fetal Brain Male	brain
11	chr4:30865200-30872200	Weak transcription	Left Ventricle	heart
12	chr4:30867200-30868600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr4:30867200-30870800	Enhancers	Fetal Lung	lung
14	chr4:30867400-30868800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:30867400-30869400	Enhancers	Fetal Intestine Small	intestine
16	chr4:30867400-30869400	Enhancers	NH-A	brain
17	chr4:30867400-30870800	Enhancers	Fetal Stomach	stomach
18	chr4:30867600-30869000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:30867800-30868600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr4:30868000-30868600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:30868000-30868600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:30868000-30868600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr4:30868000-30868600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr4:30868000-30868800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr4:30868000-30869400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr4:30868000-30870000	Enhancers	HMEC	breast
27	chr4:30868200-30869400	Active TSS	Aorta	Aorta
28	chr4:30868200-30870000	Enhancers	NHEK	skin
29	chr4:30868400-30868800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr4:30868400-30868800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:30868400-30868800	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr4:30868400-30869400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr4:30868400-30870400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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