Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10008068	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10010853	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13112641	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13122707	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13140818	0.87[ASN][1000 genomes]
rs16884201	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28752062	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34059778	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34170853	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34547954	0.90[ASN][1000 genomes]
rs34625421	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35117412	0.82[EUR][1000 genomes]
rs35235147	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35262065	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35554621	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61794533	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61794534	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61795875	0.84[AMR][1000 genomes]
rs61795887	0.94[EUR][1000 genomes]
rs6819579	0.88[EUR][1000 genomes]
rs71598132	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30904000-30907600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:30904600-30907600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:30904800-30907800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:30905200-30907200	Enhancers	Fetal Intestine Large	intestine
5	chr4:30905200-30907800	Enhancers	Fetal Intestine Small	intestine
6	chr4:30905400-30906400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:30905600-30906800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr4:30905600-30907000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:30905600-30907000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:30905600-30907000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:30905800-30906400	Enhancers	Aorta	Aorta
12	chr4:30905800-30907400	Enhancers	Duodenum Mucosa	Duodenum
13	chr4:30906000-30906800	Enhancers	Fetal Lung	lung
14	chr4:30906000-30907400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr4:30906000-30909000	Weak transcription	Hela-S3	cervix
16	chr4:30906200-30907000	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr4:30906200-30907800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:30906200-30907800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:30906200-30908000	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search: