Variant report

Variant	rs4361347
Chromosome Location	chr4:30974021-30974022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10000401	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10013694	0.85[EUR][1000 genomes]
rs10021544	0.82[CEU][hapmap];0.95[CHB][hapmap]
rs10517219	1.00[YRI][hapmap]
rs10805300	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10939317	0.83[EUR][1000 genomes]
rs10939318	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10939325	0.86[CEU][hapmap];0.95[CHB][hapmap]
rs11727594	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11735048	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12512796	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13120686	0.84[EUR][1000 genomes]
rs13127450	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13138590	1.00[YRI][hapmap]
rs13145109	0.80[CHB][hapmap]
rs13151051	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs28670870	0.84[EUR][1000 genomes]
rs2871476	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs4075130	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4235013	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4235014	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes]
rs4235015	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4259023	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4260492	0.85[EUR][1000 genomes]
rs4261943	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4266255	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4337695	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4358358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4368569	1.00[YRI][hapmap]
rs4380481	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4466008	1.00[YRI][hapmap]
rs4469028	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4487300	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs4491979	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4557225	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4585258	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs4611883	1.00[YRI][hapmap]
rs4692107	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4692109	0.83[CEU][hapmap];0.95[CHB][hapmap]
rs4692490	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs5001866	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6448730	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs6812005	1.00[YRI][hapmap]
rs6840698	0.85[EUR][1000 genomes]
rs6847642	1.00[YRI][hapmap]
rs7658077	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7661924	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7662881	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7669015	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7673048	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7683848	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7683968	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7696462	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9291553	1.00[YRI][hapmap]
rs9685207	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9997529	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30964600-30992600	Weak transcription	Aorta	Aorta
3	chr4:30967800-30976000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:30971000-30975200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:30971200-30976000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:30972800-30976000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:30973200-30976000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:30973200-30976000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:30973200-30976200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr4:30973400-30975000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr4:30973400-30975400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:30973800-30974800	Enhancers	Hela-S3	cervix
13	chr4:30974000-30974200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:30974000-30974400	Enhancers	Muscle Satellite Cultured Cells	--

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