Variant report

Variant	rs4235013
Chromosome Location	chr4:30920926-30920927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr4:30920692-30920997	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
PCDH7	TF binding region

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10000401	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10013694	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10021544	0.86[CEU][hapmap]
rs10027633	0.82[EUR][1000 genomes]
rs10805300	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10939317	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10939318	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10939325	0.91[CEU][hapmap]
rs11722640	0.81[EUR][1000 genomes]
rs11727594	0.90[EUR][1000 genomes]
rs11735048	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12512796	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13120686	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13127450	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13151051	0.86[CEU][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28670870	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2871476	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4075130	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4235014	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4235015	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4259023	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4260492	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4261943	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4266255	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4337695	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4358358	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4361347	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4374588	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4380481	0.89[EUR][1000 genomes]
rs4441719	0.83[EUR][1000 genomes]
rs4469028	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4487300	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4491979	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4536889	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs4557225	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4585258	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4692107	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4692109	0.86[CEU][hapmap]
rs4692485	0.82[EUR][1000 genomes]
rs4692487	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs4692488	0.82[EUR][1000 genomes]
rs4692489	0.80[CEU][hapmap];0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4692490	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs5001866	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6448726	0.82[EUR][1000 genomes]
rs6448727	0.80[EUR][1000 genomes]
rs6448730	0.85[CEU][hapmap]
rs6819406	0.85[EUR][1000 genomes]
rs6821487	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6839087	0.81[EUR][1000 genomes]
rs6840698	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6856017	0.87[AFR][1000 genomes]
rs7658077	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7661924	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7662881	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7669015	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7673048	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7678386	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7679853	0.87[AFR][1000 genomes]
rs7683848	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7683968	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7696462	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9685207	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9990832	0.82[EUR][1000 genomes]
rs9996030	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9997116	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9997529	0.80[CEU][hapmap]
rs9998569	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9999771	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30923800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:30914400-30928200	Weak transcription	Fetal Lung	lung
4	chr4:30914400-30940600	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:30917600-30922400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:30918600-30921600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:30918600-30921800	Weak transcription	Aorta	Aorta
8	chr4:30918600-30922000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:30918600-30925800	Weak transcription	Fetal Intestine Small	intestine
10	chr4:30919400-30926200	Weak transcription	Left Ventricle	heart
11	chr4:30919600-30922400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:30920000-30922400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:30920000-30922400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr4:30920200-30922200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:30920400-30922200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:30920400-30922600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr4:30920600-30921800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:30920600-30947400	Weak transcription	Fetal Stomach	stomach

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