Variant report

Variant	rs6856017
Chromosome Location	chr4:30916863-30916864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30912706..30915517-chr4:30915554..30917993,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10000401	0.85[AFR][1000 genomes]
rs10013694	0.85[AFR][1000 genomes]
rs10033947	0.91[ASN][1000 genomes]
rs10939316	0.86[ASN][1000 genomes]
rs10939317	0.85[AFR][1000 genomes]
rs10939318	0.82[AFR][1000 genomes]
rs11724560	0.91[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs11725675	0.86[ASN][1000 genomes]
rs11729893	0.86[ASN][1000 genomes]
rs11732590	0.86[ASN][1000 genomes]
rs11735048	0.94[ASW][hapmap];0.85[LWK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs11937211	0.91[CHB][hapmap];0.89[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs11946614	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11947417	0.87[ASN][1000 genomes]
rs12650430	0.86[ASN][1000 genomes]
rs13120686	0.87[AFR][1000 genomes]
rs13127450	0.85[AFR][1000 genomes]
rs13151051	0.85[AFR][1000 genomes]
rs16884199	0.85[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs35894739	0.92[ASN][1000 genomes]
rs4075130	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs4235013	0.87[AFR][1000 genomes]
rs4235014	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs4260492	0.85[AFR][1000 genomes]
rs4261943	0.83[AFR][1000 genomes]
rs4324522	0.86[ASN][1000 genomes]
rs4337695	0.83[AFR][1000 genomes]
rs4469028	0.94[ASW][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs4692489	0.91[AFR][1000 genomes]
rs5001866	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs59783582	0.92[ASN][1000 genomes]
rs6817713	0.91[CHB][hapmap];0.89[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs6817736	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs6821487	0.90[AFR][1000 genomes]
rs6833871	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6840698	0.85[AFR][1000 genomes]
rs6856304	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6856720	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73214927	0.83[ASN][1000 genomes]
rs7439866	0.91[CHB][hapmap];0.89[CHD][hapmap];0.83[JPT][hapmap]
rs7658077	0.94[ASW][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs7661924	0.85[AFR][1000 genomes]
rs7662881	0.85[AFR][1000 genomes]
rs7669015	0.85[AFR][1000 genomes]
rs7673048	0.82[AFR][1000 genomes]
rs7679853	0.84[AFR][1000 genomes]
rs7683848	0.85[AFR][1000 genomes]
rs7696462	0.94[ASW][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs9996030	0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs9998569	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30918000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:30914200-30918200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:30914200-30923800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:30914400-30917600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:30914400-30918000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:30914400-30918000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:30914400-30918000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:30914400-30918000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:30914400-30918200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:30914400-30919400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:30914400-30928200	Weak transcription	Fetal Lung	lung
13	chr4:30914400-30940600	Weak transcription	Colon Smooth Muscle	Colon

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