Variant report

Variant	rs6817713
Chromosome Location	chr4:30897052-30897053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10033947	0.87[ASN][1000 genomes]
rs10461085	0.81[CHB][hapmap]
rs10517220	0.87[GIH][hapmap]
rs10939316	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11724560	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11725675	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11729893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11732590	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11934948	0.87[GIH][hapmap]
rs11937211	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11939033	1.00[ASW][hapmap];0.87[GIH][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11945622	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11946614	0.87[ASN][1000 genomes]
rs11947417	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12642584	0.83[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs12650430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16884199	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs35894739	0.88[ASN][1000 genomes]
rs4324522	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59783582	0.88[ASN][1000 genomes]
rs66997044	0.81[EUR][1000 genomes]
rs6813421	0.95[AFR][1000 genomes]
rs6813708	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs6817721	1.00[ASW][hapmap];0.87[GIH][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6817736	1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs6818328	0.93[AFR][1000 genomes]
rs6826336	0.81[EUR][1000 genomes]
rs6832127	0.88[GIH][hapmap]
rs6833448	0.87[GIH][hapmap]
rs6833871	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs6839018	0.88[AFR][1000 genomes]
rs6856017	0.91[CHB][hapmap];0.89[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs6856304	0.90[ASN][1000 genomes]
rs6856720	0.90[ASN][1000 genomes]
rs73214927	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73214930	0.96[AFR][1000 genomes]
rs73812667	0.95[AFR][1000 genomes]
rs7439866	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
2	chr4:30883200-30899000	Weak transcription	Aorta	Aorta
3	chr4:30891600-30903400	Weak transcription	Fetal Kidney	kidney
4	chr4:30896000-30899400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:30896800-30897200	Enhancers	HUES48 Cell Line	embryonic stem cell

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