Variant report

Variant	rs12642584
Chromosome Location	chr4:30952042-30952043
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10012785	1.00[YRI][hapmap]
rs10805302	0.91[CHB][hapmap]
rs11724560	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs11937211	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs4490422	1.00[YRI][hapmap]
rs4499665	1.00[YRI][hapmap]
rs4538442	1.00[YRI][hapmap]
rs4692493	0.88[YRI][hapmap]
rs66578250	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66997044	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6813708	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6817713	0.83[CEU][hapmap];0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs6818938	1.00[YRI][hapmap]
rs6826336	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6832127	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs6844071	0.82[YRI][hapmap]
rs7439866	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs7659873	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30945000-30952400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:30945200-30954000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:30945400-30954600	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:30947400-30952200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:30947600-30952600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:30948200-30953000	Weak transcription	Aorta	Aorta
8	chr4:30948200-30954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:30948200-30956000	Weak transcription	Fetal Heart	heart
10	chr4:30949400-30955800	Enhancers	Hela-S3	cervix
11	chr4:30950400-30952800	Enhancers	NHEK	skin
12	chr4:30950400-30954800	Enhancers	HMEC	breast
13	chr4:30950800-30956400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:30951400-30954000	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:30951600-30955200	Enhancers	Fetal Intestine Large	intestine
16	chr4:30951600-30956400	Enhancers	Fetal Intestine Small	intestine
17	chr4:30951800-30953600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:30952000-30952600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr4:30952000-30953000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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