Variant report

Variant	rs7439866
Chromosome Location	chr4:30892066-30892067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10461085	0.81[CHB][hapmap]
rs10517220	0.87[GIH][hapmap]
rs11724560	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs11934948	0.87[GIH][hapmap]
rs11937211	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs11939033	1.00[ASW][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs11945622	1.00[YRI][hapmap]
rs12642584	0.83[CEU][hapmap];0.82[CHB][hapmap]
rs16884199	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6813708	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs6817713	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6817721	1.00[ASW][hapmap];0.87[GIH][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs6817736	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs6832127	0.88[GIH][hapmap]
rs6833448	0.87[GIH][hapmap]
rs6833871	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs6856017	0.91[CHB][hapmap];0.89[CHD][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30870800-30903200	Weak transcription	Fetal Lung	lung
2	chr4:30879800-30893000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:30883200-30899000	Weak transcription	Aorta	Aorta
4	chr4:30891600-30903400	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links