Variant report

Variant	rs6833871
Chromosome Location	chr4:30903443-30903444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10027633	0.86[AFR][1000 genomes]
rs10033947	0.92[ASN][1000 genomes]
rs10461085	0.81[CHB][hapmap]
rs10939316	0.87[ASN][1000 genomes]
rs11722640	0.90[AFR][1000 genomes]
rs11724560	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11725675	0.87[ASN][1000 genomes]
rs11729893	0.87[ASN][1000 genomes]
rs11732590	0.87[ASN][1000 genomes]
rs11937211	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs11946614	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11947417	0.86[ASN][1000 genomes]
rs12650430	0.87[ASN][1000 genomes]
rs16884199	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35894739	0.93[ASN][1000 genomes]
rs4324522	0.87[ASN][1000 genomes]
rs4441719	0.90[AFR][1000 genomes]
rs4536889	0.90[AFR][1000 genomes]
rs4586889	0.90[AFR][1000 genomes]
rs4692483	0.90[AFR][1000 genomes]
rs4692485	0.89[AFR][1000 genomes]
rs4692487	0.90[AFR][1000 genomes]
rs4692488	0.90[AFR][1000 genomes]
rs59783582	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6448727	0.86[AFR][1000 genomes]
rs6817713	1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs6817736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6819406	0.84[AFR][1000 genomes]
rs6839087	0.83[AFR][1000 genomes]
rs6856017	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6856304	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856720	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214927	0.84[ASN][1000 genomes]
rs73812666	0.94[AFR][1000 genomes]
rs73812668	0.96[AFR][1000 genomes]
rs73812669	0.96[AFR][1000 genomes]
rs7439866	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs7665348	0.85[AFR][1000 genomes]
rs9990832	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30901400-30904600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:30902800-30903600	Enhancers	Fetal Intestine Small	intestine
3	chr4:30903000-30904800	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:30903200-30903800	Enhancers	Duodenum Mucosa	Duodenum
5	chr4:30903200-30904000	Enhancers	Fetal Lung	lung
6	chr4:30903400-30903600	Enhancers	Colon Smooth Muscle	Colon
7	chr4:30903400-30903800	Active TSS	Fetal Intestine Large	intestine
8	chr4:30903400-30903800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr4:30903400-30904000	Enhancers	Fetal Kidney	kidney
10	chr4:30903400-30904600	Enhancers	Rectal Mucosa Donor 31	rectum

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