Variant report

Variant	rs11722640
Chromosome Location	chr4:30906417-30906418
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10000401	0.82[EUR][1000 genomes]
rs10012785	0.82[CHB][hapmap]
rs10013694	0.82[EUR][1000 genomes]
rs10027633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10805300	0.80[EUR][1000 genomes]
rs10939317	0.81[EUR][1000 genomes]
rs11735048	0.91[GIH][hapmap];0.81[MKK][hapmap];0.82[EUR][1000 genomes]
rs12651441	0.94[ASN][1000 genomes]
rs13120686	0.81[EUR][1000 genomes]
rs13127450	0.82[EUR][1000 genomes]
rs13139390	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13151051	0.82[EUR][1000 genomes]
rs1447365	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28670870	0.85[EUR][1000 genomes]
rs4075130	0.82[EUR][1000 genomes]
rs4235011	0.88[ASN][1000 genomes]
rs4235013	0.81[EUR][1000 genomes]
rs4235014	0.82[EUR][1000 genomes]
rs4235015	0.82[EUR][1000 genomes]
rs4259023	0.82[EUR][1000 genomes]
rs4260492	0.82[EUR][1000 genomes]
rs4261943	0.82[EUR][1000 genomes]
rs4266255	0.82[EUR][1000 genomes]
rs4337695	0.82[EUR][1000 genomes]
rs4441719	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4469028	0.91[GIH][hapmap];0.82[EUR][1000 genomes]
rs4487300	0.85[EUR][1000 genomes]
rs4490422	0.86[CHB][hapmap]
rs4491979	0.82[EUR][1000 genomes]
rs4499665	0.86[CHB][hapmap]
rs4527444	0.88[ASN][1000 genomes]
rs4536889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538442	0.86[CHB][hapmap]
rs4557225	0.82[EUR][1000 genomes]
rs4586889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692107	0.81[EUR][1000 genomes]
rs4692483	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692485	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4692487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692489	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4692493	0.91[CHB][hapmap]
rs5001866	0.82[EUR][1000 genomes]
rs6448727	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6818938	0.86[CHB][hapmap]
rs6819406	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6821487	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6833871	0.90[AFR][1000 genomes]
rs6838322	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839087	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6840698	0.82[EUR][1000 genomes]
rs73812666	0.85[AFR][1000 genomes]
rs73812668	0.86[AFR][1000 genomes]
rs73812669	0.86[AFR][1000 genomes]
rs7434610	0.88[ASN][1000 genomes]
rs7658077	0.91[GIH][hapmap];0.82[EUR][1000 genomes]
rs7659873	0.86[CHB][hapmap]
rs7661924	0.82[EUR][1000 genomes]
rs7662881	0.82[EUR][1000 genomes]
rs7665348	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7669015	0.82[EUR][1000 genomes]
rs7673048	0.82[EUR][1000 genomes]
rs7678386	0.81[EUR][1000 genomes]
rs7679853	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7683848	0.82[EUR][1000 genomes]
rs7683968	0.82[EUR][1000 genomes]
rs7696462	0.91[GIH][hapmap];0.82[EUR][1000 genomes]
rs9685207	0.94[GIH][hapmap];0.82[EUR][1000 genomes]
rs9990832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996030	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9997529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9998569	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30904000-30907600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:30904600-30907600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:30904800-30907800	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:30905200-30907200	Enhancers	Fetal Intestine Large	intestine
5	chr4:30905200-30907800	Enhancers	Fetal Intestine Small	intestine
6	chr4:30905600-30906800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr4:30905600-30907000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:30905600-30907000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:30905600-30907000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:30905800-30907400	Enhancers	Duodenum Mucosa	Duodenum
11	chr4:30906000-30906800	Enhancers	Fetal Lung	lung
12	chr4:30906000-30907400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:30906000-30909000	Weak transcription	Hela-S3	cervix
14	chr4:30906200-30907000	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr4:30906200-30907800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:30906200-30907800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr4:30906200-30908000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr4:30906400-30907200	Weak transcription	Aorta	Aorta

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