Variant report

Variant	rs73812669
Chromosome Location	chr4:30904551-30904552
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10027633	0.82[AFR][1000 genomes]
rs11722640	0.86[AFR][1000 genomes]
rs11937102	0.89[AMR][1000 genomes]
rs35375425	1.00[EUR][1000 genomes]
rs4441719	0.86[AFR][1000 genomes]
rs4508845	0.89[AMR][1000 genomes]
rs4536889	0.86[AFR][1000 genomes]
rs4586889	0.86[AFR][1000 genomes]
rs4692483	0.86[AFR][1000 genomes]
rs4692485	0.85[AFR][1000 genomes]
rs4692487	0.86[AFR][1000 genomes]
rs4692488	0.86[AFR][1000 genomes]
rs56721987	1.00[EUR][1000 genomes]
rs56797750	1.00[EUR][1000 genomes]
rs57684167	1.00[EUR][1000 genomes]
rs58976542	1.00[EUR][1000 genomes]
rs60310358	1.00[EUR][1000 genomes]
rs6448727	0.83[AFR][1000 genomes]
rs6819406	0.83[AFR][1000 genomes]
rs6825443	0.89[AMR][1000 genomes]
rs6825633	0.89[AMR][1000 genomes]
rs6833871	0.96[AFR][1000 genomes]
rs6839944	0.89[AMR][1000 genomes]
rs6843117	0.89[AMR][1000 genomes]
rs73213202	1.00[EUR][1000 genomes]
rs73812630	1.00[EUR][1000 genomes]
rs73812631	1.00[EUR][1000 genomes]
rs73812633	1.00[EUR][1000 genomes]
rs73812634	1.00[EUR][1000 genomes]
rs73812637	1.00[EUR][1000 genomes]
rs73812653	1.00[EUR][1000 genomes]
rs73812659	1.00[EUR][1000 genomes]
rs73812660	1.00[EUR][1000 genomes]
rs73812662	1.00[EUR][1000 genomes]
rs73812664	1.00[EUR][1000 genomes]
rs73812666	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812671	1.00[EUR][1000 genomes]
rs73812675	1.00[EUR][1000 genomes]
rs73812676	1.00[EUR][1000 genomes]
rs73812677	1.00[EUR][1000 genomes]
rs73812701	1.00[EUR][1000 genomes]
rs7665348	0.82[AFR][1000 genomes]
rs7669632	0.89[AMR][1000 genomes]
rs9990832	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30901400-30904600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:30903000-30904800	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:30903400-30904600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr4:30903800-30905200	Weak transcription	Fetal Intestine Large	intestine
5	chr4:30903800-30905800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:30904000-30904800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:30904000-30906000	Weak transcription	Fetal Lung	lung
8	chr4:30904000-30907600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:30904200-30905200	Weak transcription	Fetal Intestine Small	intestine
10	chr4:30904400-30905600	Enhancers	HUES48 Cell Line	embryonic stem cell

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