Variant report

Variant	rs56721987
Chromosome Location	chr4:30905677-30905678
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs34272279	1.00[AMR][1000 genomes]
rs35375425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56703072	1.00[AFR][1000 genomes]
rs56797750	1.00[EUR][1000 genomes]
rs57420512	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57684167	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58976542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60310358	1.00[EUR][1000 genomes]
rs73213202	1.00[EUR][1000 genomes]
rs73812519	1.00[AMR][1000 genomes]
rs73812521	1.00[AMR][1000 genomes]
rs73812630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812633	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812634	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812637	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812653	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812666	1.00[EUR][1000 genomes]
rs73812668	1.00[EUR][1000 genomes]
rs73812669	1.00[EUR][1000 genomes]
rs73812671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812677	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812699	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73812701	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73815166	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30903800-30905800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:30904000-30906000	Weak transcription	Fetal Lung	lung
3	chr4:30904000-30907600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:30904600-30907600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:30904800-30905800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:30904800-30906000	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr4:30904800-30907800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:30905000-30906000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:30905200-30906000	Enhancers	Hela-S3	cervix
10	chr4:30905200-30907200	Enhancers	Fetal Intestine Large	intestine
11	chr4:30905200-30907800	Enhancers	Fetal Intestine Small	intestine
12	chr4:30905400-30906200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr4:30905400-30906400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:30905600-30905800	Weak transcription	Aorta	Aorta
15	chr4:30905600-30906200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr4:30905600-30906800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr4:30905600-30907000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:30905600-30907000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr4:30905600-30907000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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