Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs28565014	1.00[EUR][1000 genomes]
rs35375425	1.00[EUR][1000 genomes]
rs56721987	1.00[EUR][1000 genomes]
rs56797750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57684167	1.00[EUR][1000 genomes]
rs58976542	1.00[EUR][1000 genomes]
rs60310358	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812630	1.00[EUR][1000 genomes]
rs73812631	1.00[EUR][1000 genomes]
rs73812633	1.00[EUR][1000 genomes]
rs73812634	1.00[EUR][1000 genomes]
rs73812637	1.00[EUR][1000 genomes]
rs73812653	1.00[EUR][1000 genomes]
rs73812659	1.00[EUR][1000 genomes]
rs73812660	1.00[EUR][1000 genomes]
rs73812662	1.00[EUR][1000 genomes]
rs73812664	1.00[EUR][1000 genomes]
rs73812666	1.00[EUR][1000 genomes]
rs73812668	1.00[EUR][1000 genomes]
rs73812669	1.00[EUR][1000 genomes]
rs73812671	1.00[EUR][1000 genomes]
rs73812675	1.00[EUR][1000 genomes]
rs73812676	1.00[EUR][1000 genomes]
rs73812677	1.00[EUR][1000 genomes]
rs73812701	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30825200-30835800	Weak transcription	Aorta	Aorta
3	chr4:30830200-30838400	Weak transcription	Fetal Stomach	stomach
4	chr4:30830600-30837800	Weak transcription	NH-A	brain
5	chr4:30830800-30838400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:30833400-30842800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:30834600-30835200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:30834600-30835200	Enhancers	Left Ventricle	heart
9	chr4:30834600-30836800	Weak transcription	Right Ventricle	heart
10	chr4:30834600-30838000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:30834800-30835400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:30834800-30838600	Enhancers	Fetal Heart	heart
13	chr4:30835000-30835200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:30835000-30836600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:30835000-30837000	Weak transcription	Stomach Smooth Muscle	stomach

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