Variant report

Variant	rs35375425
Chromosome Location	chr4:30940037-30940038
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs34272279	1.00[AMR][1000 genomes]
rs56721987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56797750	1.00[EUR][1000 genomes]
rs57420512	1.00[AMR][1000 genomes]
rs57684167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58976542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60310358	1.00[EUR][1000 genomes]
rs73213202	1.00[EUR][1000 genomes]
rs73812519	1.00[AMR][1000 genomes]
rs73812521	1.00[AMR][1000 genomes]
rs73812630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812631	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812659	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812664	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812666	1.00[EUR][1000 genomes]
rs73812668	1.00[EUR][1000 genomes]
rs73812669	1.00[EUR][1000 genomes]
rs73812671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812677	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73812699	1.00[AMR][1000 genomes]
rs73812701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73815166	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30914400-30940600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:30920600-30947400	Weak transcription	Fetal Stomach	stomach
4	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
5	chr4:30932800-30940600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:30935200-30947400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:30938200-30945800	Enhancers	Fetal Intestine Small	intestine
8	chr4:30938400-30941800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:30939000-30941800	Enhancers	NHEK	skin
10	chr4:30939200-30941600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:30939400-30941600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr4:30939400-30941600	Enhancers	HMEC	breast
13	chr4:30939600-30941600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:30939600-30945000	Enhancers	Fetal Intestine Large	intestine
15	chr4:30939800-30940800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:30939800-30941400	Enhancers	Fetal Heart	heart
17	chr4:30940000-30941200	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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