Variant report
| Variant | rs73812666 |
|---|---|
| Chromosome Location | chr4:30899745-30899746 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10027633 | 0.80[AFR][1000 genomes] |
| rs11722640 | 0.85[AFR][1000 genomes] |
| rs35375425 | 1.00[EUR][1000 genomes] |
| rs4441719 | 0.85[AFR][1000 genomes] |
| rs4536889 | 0.85[AFR][1000 genomes] |
| rs4586889 | 0.85[AFR][1000 genomes] |
| rs4692483 | 0.85[AFR][1000 genomes] |
| rs4692485 | 0.84[AFR][1000 genomes] |
| rs4692487 | 0.85[AFR][1000 genomes] |
| rs4692488 | 0.85[AFR][1000 genomes] |
| rs56721987 | 1.00[EUR][1000 genomes] |
| rs56797750 | 1.00[EUR][1000 genomes] |
| rs57684167 | 1.00[EUR][1000 genomes] |
| rs58976542 | 1.00[EUR][1000 genomes] |
| rs60310358 | 1.00[EUR][1000 genomes] |
| rs6448727 | 0.81[AFR][1000 genomes] |
| rs6819406 | 0.81[AFR][1000 genomes] |
| rs6833871 | 0.94[AFR][1000 genomes] |
| rs73213202 | 1.00[EUR][1000 genomes] |
| rs73812630 | 1.00[EUR][1000 genomes] |
| rs73812631 | 1.00[EUR][1000 genomes] |
| rs73812633 | 1.00[EUR][1000 genomes] |
| rs73812634 | 1.00[EUR][1000 genomes] |
| rs73812637 | 1.00[EUR][1000 genomes] |
| rs73812653 | 1.00[EUR][1000 genomes] |
| rs73812659 | 1.00[EUR][1000 genomes] |
| rs73812660 | 1.00[EUR][1000 genomes] |
| rs73812662 | 1.00[EUR][1000 genomes] |
| rs73812664 | 1.00[EUR][1000 genomes] |
| rs73812668 | 0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73812669 | 0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73812671 | 1.00[EUR][1000 genomes] |
| rs73812675 | 1.00[EUR][1000 genomes] |
| rs73812676 | 1.00[EUR][1000 genomes] |
| rs73812677 | 1.00[EUR][1000 genomes] |
| rs73812701 | 1.00[EUR][1000 genomes] |
| rs7665348 | 0.80[AFR][1000 genomes] |
| rs9990832 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv878810 | chr4:30823157-30987395 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv998450 | chr4:30823631-31628179 | Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:30870800-30903200 | Weak transcription | Fetal Lung | lung |
| 2 | chr4:30891600-30903400 | Weak transcription | Fetal Kidney | kidney |
| 3 | chr4:30899400-30899800 | Active TSS | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
