Variant report

Variant	rs4441719
Chromosome Location	chr4:30913705-30913706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30912706..30915517-chr4:30915554..30917993,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10000401	0.84[EUR][1000 genomes]
rs10012785	0.82[CHB][hapmap]
rs10013694	0.84[EUR][1000 genomes]
rs10027633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10805300	0.82[EUR][1000 genomes]
rs10939317	0.83[EUR][1000 genomes]
rs10939318	0.81[EUR][1000 genomes]
rs11722640	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735048	0.94[GIH][hapmap];0.84[EUR][1000 genomes]
rs12512796	0.82[EUR][1000 genomes]
rs12651441	0.94[ASN][1000 genomes]
rs13120686	0.83[EUR][1000 genomes]
rs13127450	0.84[EUR][1000 genomes]
rs13139390	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13151051	0.84[EUR][1000 genomes]
rs1447365	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28670870	0.83[EUR][1000 genomes]
rs4075130	0.84[EUR][1000 genomes]
rs4235011	0.88[ASN][1000 genomes]
rs4235013	0.83[EUR][1000 genomes]
rs4235014	0.84[EUR][1000 genomes]
rs4235015	0.84[EUR][1000 genomes]
rs4259023	0.84[EUR][1000 genomes]
rs4260492	0.84[EUR][1000 genomes]
rs4261943	0.84[EUR][1000 genomes]
rs4266255	0.84[EUR][1000 genomes]
rs4337695	0.84[EUR][1000 genomes]
rs4469028	0.94[GIH][hapmap];0.84[EUR][1000 genomes]
rs4487300	0.83[EUR][1000 genomes]
rs4490422	0.86[CHB][hapmap]
rs4491979	0.84[EUR][1000 genomes]
rs4499665	0.86[CHB][hapmap]
rs4527444	0.88[ASN][1000 genomes]
rs4536889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538442	0.86[CHB][hapmap]
rs4557225	0.84[EUR][1000 genomes]
rs4586889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692107	0.83[EUR][1000 genomes]
rs4692483	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692485	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4692487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692489	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4692490	0.82[EUR][1000 genomes]
rs4692493	0.91[CHB][hapmap]
rs5001866	0.84[EUR][1000 genomes]
rs6448727	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6818938	0.86[CHB][hapmap]
rs6819406	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6821487	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6833871	0.90[AFR][1000 genomes]
rs6838322	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839087	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6840698	0.84[EUR][1000 genomes]
rs73812666	0.85[AFR][1000 genomes]
rs73812668	0.86[AFR][1000 genomes]
rs73812669	0.86[AFR][1000 genomes]
rs7434610	0.88[ASN][1000 genomes]
rs7658077	0.94[GIH][hapmap];0.84[EUR][1000 genomes]
rs7659873	0.86[CHB][hapmap]
rs7661924	0.84[EUR][1000 genomes]
rs7662881	0.84[EUR][1000 genomes]
rs7665348	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7669015	0.84[EUR][1000 genomes]
rs7673048	0.84[EUR][1000 genomes]
rs7679853	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7683848	0.84[EUR][1000 genomes]
rs7683968	0.84[EUR][1000 genomes]
rs7696462	0.94[GIH][hapmap];0.84[EUR][1000 genomes]
rs9685207	0.97[GIH][hapmap];0.84[EUR][1000 genomes]
rs9990832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9996030	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9997529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9998569	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30907000-30913800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:30912800-30914200	Enhancers	Fetal Heart	heart
3	chr4:30913200-30914200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:30913400-30913800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:30913400-30914200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:30913400-30914200	Enhancers	Stomach Smooth Muscle	stomach
7	chr4:30913400-30914400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:30913400-30914400	Enhancers	NH-A	brain
9	chr4:30913600-30914200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:30913600-30914200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:30913600-30914400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:30913600-30914400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:30913600-30914600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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