Variant report

Variant	rs12651441
Chromosome Location	chr4:30917237-30917238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30912706..30915517-chr4:30915554..30917993,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10000401	0.80[AFR][1000 genomes]
rs10012785	0.84[EUR][1000 genomes]
rs10013694	0.80[AFR][1000 genomes]
rs10019992	0.85[EUR][1000 genomes]
rs10027633	0.91[ASN][1000 genomes]
rs10805301	0.89[EUR][1000 genomes]
rs10939317	0.80[AFR][1000 genomes]
rs11722640	0.94[ASN][1000 genomes]
rs11935571	0.85[EUR][1000 genomes]
rs11938163	0.84[EUR][1000 genomes]
rs11941302	0.84[EUR][1000 genomes]
rs11942794	0.85[EUR][1000 genomes]
rs12511227	0.84[EUR][1000 genomes]
rs13108231	0.84[EUR][1000 genomes]
rs13127450	0.80[AFR][1000 genomes]
rs13139390	0.88[ASN][1000 genomes]
rs13149295	0.88[EUR][1000 genomes]
rs13149300	0.88[EUR][1000 genomes]
rs13151051	0.80[AFR][1000 genomes]
rs1447365	0.92[ASN][1000 genomes]
rs4075130	0.80[AFR][1000 genomes]
rs4235011	0.87[ASN][1000 genomes]
rs4235014	0.80[AFR][1000 genomes]
rs4260492	0.80[AFR][1000 genomes]
rs4379027	0.85[EUR][1000 genomes]
rs4441719	0.94[ASN][1000 genomes]
rs4490422	0.92[EUR][1000 genomes]
rs4499665	0.92[EUR][1000 genomes]
rs4527444	0.87[ASN][1000 genomes]
rs4536889	0.94[ASN][1000 genomes]
rs4538442	0.85[EUR][1000 genomes]
rs4547762	0.85[EUR][1000 genomes]
rs4586889	0.94[ASN][1000 genomes]
rs4692483	0.94[ASN][1000 genomes]
rs4692485	0.91[ASN][1000 genomes]
rs4692487	0.94[ASN][1000 genomes]
rs4692488	0.94[ASN][1000 genomes]
rs4692489	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4692493	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6448727	0.94[ASN][1000 genomes]
rs6818938	0.88[EUR][1000 genomes]
rs6819406	0.93[ASN][1000 genomes]
rs6821487	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6838322	0.94[ASN][1000 genomes]
rs6839087	0.94[ASN][1000 genomes]
rs6840698	0.80[AFR][1000 genomes]
rs7434610	0.87[ASN][1000 genomes]
rs7658077	0.80[AFR][1000 genomes]
rs7661924	0.80[AFR][1000 genomes]
rs7662881	0.80[AFR][1000 genomes]
rs7665348	0.93[ASN][1000 genomes]
rs7667487	0.84[AFR][1000 genomes]
rs7669015	0.80[AFR][1000 genomes]
rs7679853	0.93[ASN][1000 genomes]
rs7683848	0.80[AFR][1000 genomes]
rs7687580	0.84[EUR][1000 genomes]
rs7696462	0.80[AFR][1000 genomes]
rs9990832	0.94[ASN][1000 genomes]
rs9995296	0.89[EUR][1000 genomes]
rs9996030	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9997529	0.94[ASN][1000 genomes]
rs9998569	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30918000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:30914200-30918200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:30914200-30923800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:30914400-30917600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:30914400-30918000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:30914400-30918000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:30914400-30918000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:30914400-30918000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:30914400-30918200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:30914400-30919400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:30914400-30928200	Weak transcription	Fetal Lung	lung
13	chr4:30914400-30940600	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:30917200-30918200	Weak transcription	Aorta	Aorta

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