Variant report

Variant	rs1447365
Chromosome Location	chr4:30861964-30861965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30860982..30862636-chr4:30867110..30869327,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10006361	0.85[YRI][hapmap]
rs10012637	0.80[ASW][hapmap];0.85[YRI][hapmap]
rs10014165	0.80[ASW][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs10015789	0.90[YRI][hapmap]
rs10025381	0.83[YRI][hapmap]
rs10027633	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10028966	0.84[AFR][1000 genomes]
rs10034034	0.94[YRI][hapmap]
rs11722640	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12651441	0.92[ASN][1000 genomes]
rs13139390	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1348921	0.85[YRI][hapmap]
rs1447360	0.90[YRI][hapmap]
rs1447364	0.85[YRI][hapmap]
rs16884130	0.85[YRI][hapmap]
rs2871476	0.85[EUR][1000 genomes]
rs4235011	0.93[ASN][1000 genomes]
rs4441719	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4490422	0.81[CHB][hapmap]
rs4498103	0.81[YRI][hapmap]
rs4499665	0.81[CHB][hapmap]
rs4504214	0.81[YRI][hapmap]
rs4527444	0.93[ASN][1000 genomes]
rs4536889	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4538442	0.81[CHB][hapmap]
rs4557224	0.81[YRI][hapmap]
rs4585258	0.84[EUR][1000 genomes]
rs4586889	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4692483	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4692485	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4692487	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4692488	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4692489	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4692493	0.86[CHB][hapmap]
rs6448726	0.84[EUR][1000 genomes]
rs6448727	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6815248	0.80[ASW][hapmap]
rs6818938	0.81[CHB][hapmap]
rs6819406	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6821487	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6823602	0.84[AFR][1000 genomes]
rs6827169	0.92[YRI][hapmap]
rs6838322	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6839087	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6844992	0.93[YRI][hapmap]
rs7434610	0.93[ASN][1000 genomes]
rs7659873	0.81[CHB][hapmap]
rs7665348	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7679853	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9291550	0.85[YRI][hapmap]
rs9990832	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9996030	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9997529	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9998569	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9999771	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30849200-30872200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:30855200-30879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:30855600-30867400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:30855800-30862000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:30856200-30868600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:30857200-30868200	Weak transcription	Aorta	Aorta
7	chr4:30859400-30864200	Weak transcription	Fetal Lung	lung
8	chr4:30859800-30864200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:30860600-30864800	Weak transcription	Fetal Heart	heart
10	chr4:30860800-30862800	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:30861800-30868000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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