Variant report

Variant	rs4557224
Chromosome Location	chr4:30796107-30796108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10006361	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10008728	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10021424	0.89[ASN][1000 genomes]
rs10024115	0.81[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.80[TSI][hapmap];0.91[ASN][1000 genomes]
rs1032175	0.84[ASN][1000 genomes]
rs10517219	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10939312	0.90[ASN][1000 genomes]
rs11727285	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12331633	0.91[CHB][hapmap];0.85[GIH][hapmap];0.80[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap]
rs13108018	0.80[AMR][1000 genomes]
rs13121800	0.84[ASN][1000 genomes]
rs1348921	0.83[ASW][hapmap];0.89[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.80[MKK][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447360	0.85[CEU][hapmap];0.91[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447364	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447365	0.81[YRI][hapmap]
rs1486787	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.84[ASN][1000 genomes]
rs16884130	0.86[YRI][hapmap]
rs28716204	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35428738	0.89[ASN][1000 genomes]
rs4235010	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4368569	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4380480	0.83[ASW][hapmap];0.89[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4466008	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4498103	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4504214	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4505780	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4611883	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4613528	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4615135	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4619848	0.90[CHB][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes]
rs4692105	0.91[CHB][hapmap];0.83[MEX][hapmap]
rs4995324	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6448719	0.82[ASN][1000 genomes]
rs6448720	0.83[ASN][1000 genomes]
rs6448723	0.81[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.90[ASN][1000 genomes]
rs6812005	0.93[GIH][hapmap];0.84[EUR][1000 genomes]
rs6814666	0.84[ASN][1000 genomes]
rs6815007	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6822350	0.85[EUR][1000 genomes]
rs6827723	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6828872	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6832173	0.91[ASN][1000 genomes]
rs6844992	0.86[YRI][hapmap]
rs6855232	0.91[ASN][1000 genomes]
rs6855570	0.91[ASN][1000 genomes]
rs6856144	0.88[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6858230	0.90[ASN][1000 genomes]
rs7654583	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7664926	0.91[ASN][1000 genomes]
rs7670155	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7685283	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7685566	0.82[ASN][1000 genomes]
rs7692210	0.90[CHB][hapmap]
rs7695488	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9291549	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9291550	0.86[YRI][hapmap]
rs9291553	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9999290	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4557224	ZFP1	trans	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30791200-30804400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:30791400-30802400	Weak transcription	Aorta	Aorta
3	chr4:30791400-30802600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:30791600-30809800	Weak transcription	Fetal Lung	lung
5	chr4:30794000-30796200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:30794000-30796600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:30794200-30796200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:30794400-30796200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:30794600-30796200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:30794600-30803800	Weak transcription	HSMMtube	muscle
11	chr4:30794600-30805000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:30794800-30796200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:30795200-30796200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:30795400-30796200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:30795800-30797000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:30795800-30824000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:30796000-30810400	Weak transcription	Fetal Heart	heart

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