Variant report

Variant	rs4380480
Chromosome Location	chr4:30767675-30767676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10006361	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10008728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10021424	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10024115	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1032175	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10517219	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs10939312	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11727285	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12331633	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs13111136	0.87[MEX][hapmap];0.84[TSI][hapmap]
rs13121800	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1348921	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1447360	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1447364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1486787	0.85[CEU][hapmap];0.95[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28420079	0.87[MEX][hapmap];0.84[TSI][hapmap]
rs28716204	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35428738	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775331	0.81[CEU][hapmap]
rs4235010	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4368569	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4466008	0.91[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.90[ASN][1000 genomes]
rs4498103	0.83[ASW][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.85[MKK][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4504214	0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs4505780	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4557224	0.83[ASW][hapmap];0.89[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4611883	0.91[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.91[ASN][1000 genomes]
rs4613528	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4615135	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4619848	0.81[CHB][hapmap]
rs4692105	0.82[CHB][hapmap]
rs4995324	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6448719	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6448720	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6448723	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6814666	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6815007	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6827723	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6828872	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6832173	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6855232	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6855570	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856144	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858230	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7654583	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7664926	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7670155	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7685283	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685566	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7692210	0.85[CHB][hapmap]
rs7695188	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7695488	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9291548	0.81[EUR][1000 genomes]
rs9291549	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9291553	0.90[ASN][1000 genomes]
rs9999290	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4380480	ZFP1	trans	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:30759200-30770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:30760400-30768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:30760400-30769000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:30762800-30770400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:30763000-30770400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:30763000-30770800	Weak transcription	Aorta	Aorta
8	chr4:30764200-30773000	Enhancers	HUVEC	blood vessel
9	chr4:30765400-30770000	Weak transcription	Fetal Lung	lung
10	chr4:30765600-30769000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:30765800-30769800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:30765800-30769800	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:30766000-30768800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:30766000-30770000	Weak transcription	Fetal Stomach	stomach
15	chr4:30766000-30771000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:30766000-30778000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:30766200-30770800	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:30766800-30767800	Enhancers	Fetal Heart	heart
19	chr4:30767000-30767800	Enhancers	Hela-S3	cervix
20	chr4:30767200-30767800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:30767200-30770800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:30767400-30767800	Enhancers	Left Ventricle	heart
23	chr4:30767400-30770800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:30767600-30768800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:30767600-30769000	Weak transcription	NHEK	skin
26	chr4:30767600-30769200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr4:30767600-30769800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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