Variant report

Variant	rs6448723
Chromosome Location	chr4:30761529-30761530
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10006361	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10008728	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10021424	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10024115	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1032175	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1032176	0.87[EUR][1000 genomes]
rs10517219	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10939312	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11727285	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12331633	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs13104581	0.87[EUR][1000 genomes]
rs13111136	0.85[CEU][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13121800	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13122380	0.83[EUR][1000 genomes]
rs1348921	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1447360	0.85[ASN][1000 genomes]
rs1447364	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1486787	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2121658	0.88[CEU][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes]
rs28420079	0.88[CEU][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28716204	0.92[ASN][1000 genomes]
rs35428738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3775331	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs4235010	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4368569	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs4380480	0.85[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4466008	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.87[ASN][1000 genomes]
rs4498103	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.89[ASN][1000 genomes]
rs4504214	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4505780	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4557224	0.81[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.90[ASN][1000 genomes]
rs4611883	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap];0.89[ASN][1000 genomes]
rs4613528	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4615135	0.89[ASN][1000 genomes]
rs4619848	0.86[CHB][hapmap]
rs4692105	0.86[CHB][hapmap]
rs4995324	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6448719	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6448720	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6814666	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6815007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6827723	0.89[ASN][1000 genomes]
rs6828872	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832173	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6855232	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6855570	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6856144	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6858230	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654583	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs7664926	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7670155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7685283	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7685566	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7692210	0.85[CHB][hapmap]
rs7695188	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7695488	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9291547	0.84[EUR][1000 genomes]
rs9291548	0.89[EUR][1000 genomes]
rs9291549	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291553	0.87[ASN][1000 genomes]
rs9999290	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6448723	ZFP1	trans	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:30739400-30765000	Weak transcription	Fetal Lung	lung
3	chr4:30746400-30761800	Weak transcription	Left Ventricle	heart
4	chr4:30746400-30767000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:30757200-30765400	Weak transcription	Fetal Stomach	stomach
6	chr4:30757400-30765200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:30759000-30762000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:30759000-30762400	Weak transcription	Aorta	Aorta
9	chr4:30759000-30765400	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:30759200-30770800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:30759600-30761600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:30759600-30761600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:30759800-30761600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:30759800-30761800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:30759800-30762400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr4:30760000-30761800	Weak transcription	Hela-S3	cervix
17	chr4:30760000-30762200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:30760000-30764600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr4:30760200-30762200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:30760400-30762400	Weak transcription	HMEC	breast
21	chr4:30760400-30762400	Weak transcription	NHEK	skin
22	chr4:30760400-30765400	Weak transcription	NHLF	lung
23	chr4:30760400-30766800	Weak transcription	Fetal Heart	heart
24	chr4:30760400-30768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:30760400-30769000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:30760800-30763000	Enhancers	HUVEC	blood vessel
27	chr4:30761400-30762000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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