Variant report

Variant	rs28716204
Chromosome Location	chr4:30794695-30794696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10006361	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10008728	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10021424	0.91[ASN][1000 genomes]
rs10024115	0.93[ASN][1000 genomes]
rs1032175	0.86[ASN][1000 genomes]
rs10517219	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10939312	0.92[ASN][1000 genomes]
rs11727285	0.89[ASN][1000 genomes]
rs13108018	0.83[AMR][1000 genomes]
rs13121800	0.86[ASN][1000 genomes]
rs1348921	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1447360	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1447364	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1486787	0.86[ASN][1000 genomes]
rs35428738	0.91[ASN][1000 genomes]
rs4235010	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4368569	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4380480	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4466008	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4498103	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4504214	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4505780	0.92[ASN][1000 genomes]
rs4557224	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4611883	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4613528	0.93[ASN][1000 genomes]
rs4615135	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4619848	0.84[AMR][1000 genomes]
rs4995324	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6448719	0.84[ASN][1000 genomes]
rs6448720	0.85[ASN][1000 genomes]
rs6448723	0.92[ASN][1000 genomes]
rs6812005	0.83[EUR][1000 genomes]
rs6814666	0.86[ASN][1000 genomes]
rs6815007	0.84[ASN][1000 genomes]
rs6822350	0.84[EUR][1000 genomes]
rs6827723	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6828872	0.92[ASN][1000 genomes]
rs6832173	0.93[ASN][1000 genomes]
rs6855232	0.93[ASN][1000 genomes]
rs6855570	0.93[ASN][1000 genomes]
rs6856144	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6858230	0.92[ASN][1000 genomes]
rs7654583	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7664926	0.93[ASN][1000 genomes]
rs7670155	0.93[ASN][1000 genomes]
rs7678055	0.80[AMR][1000 genomes]
rs7685283	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7685566	0.84[ASN][1000 genomes]
rs7695488	0.93[ASN][1000 genomes]
rs9291549	0.92[ASN][1000 genomes]
rs9291553	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9999290	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30791200-30794800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr4:30791200-30804400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:30791400-30794800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:30791400-30795400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:30791400-30802400	Weak transcription	Aorta	Aorta
6	chr4:30791400-30802600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:30791600-30795200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:30791600-30795200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:30791600-30809800	Weak transcription	Fetal Lung	lung
10	chr4:30792000-30795200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:30794000-30795000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:30794000-30796000	Enhancers	Fetal Heart	heart
13	chr4:30794000-30796200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:30794000-30796600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:30794200-30794800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:30794200-30795600	Enhancers	Brain Anterior Caudate	brain
17	chr4:30794200-30796000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:30794200-30796000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:30794200-30796200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:30794400-30796000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:30794400-30796200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:30794600-30796200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:30794600-30803800	Weak transcription	HSMMtube	muscle
24	chr4:30794600-30805000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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