Variant report

Variant	rs10006361
Chromosome Location	chr4:30791890-30791891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30785664..30787965-chr4:30791113..30792879,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10008728	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10012637	0.80[YRI][hapmap]
rs10013155	0.90[YRI][hapmap]
rs10014165	0.80[YRI][hapmap]
rs10021424	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10024115	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10034034	0.80[YRI][hapmap]
rs1032175	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10517219	0.80[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10939312	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11727285	0.98[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12331633	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs13121800	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1348921	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1447360	0.80[CEU][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1447364	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1447365	0.85[YRI][hapmap]
rs1486787	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16884130	0.90[YRI][hapmap]
rs28716204	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35428738	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775331	0.86[CEU][hapmap]
rs4235010	0.80[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4368569	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4380480	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4466008	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4498103	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4504214	0.80[CEU][hapmap];0.96[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4505780	0.89[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4557224	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4611883	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4613528	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4615135	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4619848	0.86[CHB][hapmap]
rs4692105	0.86[CHB][hapmap]
rs4995324	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6448719	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6448720	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6448723	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6814666	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6815007	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6827723	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6828872	0.89[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6832173	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6844992	0.93[YRI][hapmap]
rs6855232	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6855570	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6856144	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6858230	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7654583	0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[YRI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7664926	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7670155	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7685283	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7685566	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7692210	0.85[CHB][hapmap]
rs7695188	0.86[AMR][1000 genomes]
rs7695488	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9291549	0.89[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9291550	0.90[YRI][hapmap]
rs9291553	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9999290	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30790200-30792200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:30790400-30792200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:30790600-30792200	Enhancers	Fetal Kidney	kidney
4	chr4:30790600-30792200	Enhancers	Stomach Mucosa	stomach
5	chr4:30791000-30794200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:30791000-30794200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:30791200-30792600	Weak transcription	Fetal Heart	heart
8	chr4:30791200-30794200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:30791200-30794800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:30791200-30804400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:30791400-30792200	Enhancers	Fetal Intestine Large	intestine
12	chr4:30791400-30792800	Enhancers	Fetal Intestine Small	intestine
13	chr4:30791400-30794000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:30791400-30794200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:30791400-30794200	Weak transcription	Brain Anterior Caudate	brain
16	chr4:30791400-30794800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:30791400-30795400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr4:30791400-30802400	Weak transcription	Aorta	Aorta
19	chr4:30791400-30802600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:30791600-30792600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:30791600-30794000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:30791600-30794200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr4:30791600-30794400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr4:30791600-30794600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:30791600-30795200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:30791600-30795200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:30791600-30809800	Weak transcription	Fetal Lung	lung
28	chr4:30791800-30792000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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