Variant report

Variant	rs7692210
Chromosome Location	chr4:30833204-30833205
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10006361	0.85[CHB][hapmap]
rs10008728	0.83[CHB][hapmap]
rs10024115	0.85[CHB][hapmap]
rs10517219	0.90[CHB][hapmap];0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12331633	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108018	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1348921	0.85[CHB][hapmap]
rs1374658	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447360	0.82[EUR][1000 genomes]
rs1447364	0.85[CHB][hapmap]
rs1447373	0.81[CHB][hapmap]
rs1486787	0.85[CHB][hapmap]
rs2310225	0.81[CHB][hapmap]
rs4235010	0.90[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4235011	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4368569	0.89[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4380480	0.85[CHB][hapmap]
rs4466008	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4493494	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4498103	0.81[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs4504214	0.90[CHB][hapmap];0.80[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4505780	0.85[CHB][hapmap]
rs4527444	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4557224	0.90[CHB][hapmap]
rs4611883	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4615135	0.80[EUR][1000 genomes]
rs4619848	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4692105	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6448723	0.85[CHB][hapmap]
rs6815007	0.85[CHB][hapmap]
rs6827723	0.81[EUR][1000 genomes]
rs6828872	0.85[CHB][hapmap]
rs6856144	0.89[CHB][hapmap]
rs7434610	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7654583	0.94[CHB][hapmap];0.80[JPT][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7670155	0.85[CHB][hapmap]
rs7678055	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695488	0.85[CHB][hapmap]
rs9291549	0.85[CHB][hapmap]
rs9291553	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9999290	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30813800-30835800	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:30825200-30835800	Weak transcription	Aorta	Aorta
3	chr4:30827200-30833400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:30830200-30838400	Weak transcription	Fetal Stomach	stomach
5	chr4:30830600-30837800	Weak transcription	NH-A	brain
6	chr4:30830800-30838400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:30832200-30834200	Enhancers	Fetal Heart	heart
8	chr4:30832400-30834600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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