Variant report

Variant	rs1374658
Chromosome Location	chr4:30836892-30836893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10517219	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12331633	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108018	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1447360	0.81[EUR][1000 genomes]
rs4235010	0.82[AMR][1000 genomes]
rs4235011	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4368569	0.84[AMR][1000 genomes]
rs4466008	0.84[AMR][1000 genomes]
rs4493494	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4504214	0.81[EUR][1000 genomes]
rs4527444	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4611883	0.84[AMR][1000 genomes]
rs4619848	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4692105	0.99[ASN][1000 genomes]
rs7434610	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7654583	0.81[EUR][1000 genomes]
rs7678055	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692210	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9291553	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4285	chr4:30815642-30838784	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30830200-30838400	Weak transcription	Fetal Stomach	stomach
2	chr4:30830600-30837800	Weak transcription	NH-A	brain
3	chr4:30830800-30838400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:30833400-30842800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:30834600-30838000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:30834800-30838600	Enhancers	Fetal Heart	heart
7	chr4:30835000-30837000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:30835200-30837000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:30835200-30838400	Weak transcription	Left Ventricle	heart
10	chr4:30835200-30842800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:30835400-30838400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:30835800-30837200	Enhancers	Aorta	Aorta
13	chr4:30836200-30837200	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:30836400-30838600	Weak transcription	Fetal Lung	lung
15	chr4:30836600-30837400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:30836600-30842400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr4:30836800-30837000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:30836800-30837000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:30836800-30837200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr4:30836800-30837200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:30836800-30837200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr4:30836800-30837400	Enhancers	Fetal Muscle Leg	muscle
23	chr4:30836800-30837400	Enhancers	Right Ventricle	heart

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