Variant report

Variant	rs4527444
Chromosome Location	chr4:30842780-30842781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10027633	0.87[ASN][1000 genomes]
rs11722640	0.88[ASN][1000 genomes]
rs12331633	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12651441	0.87[ASN][1000 genomes]
rs13108018	0.81[EUR][1000 genomes]
rs13139390	0.82[ASN][1000 genomes]
rs1374658	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1447365	0.93[ASN][1000 genomes]
rs4235011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4235012	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4441719	0.88[ASN][1000 genomes]
rs4493494	0.81[EUR][1000 genomes]
rs4536889	0.88[ASN][1000 genomes]
rs4586889	0.88[ASN][1000 genomes]
rs4619848	0.81[EUR][1000 genomes]
rs4692483	0.88[ASN][1000 genomes]
rs4692485	0.85[ASN][1000 genomes]
rs4692487	0.88[ASN][1000 genomes]
rs4692488	0.88[ASN][1000 genomes]
rs4692489	0.88[ASN][1000 genomes]
rs6448727	0.88[ASN][1000 genomes]
rs6819406	0.87[ASN][1000 genomes]
rs6821487	0.85[ASN][1000 genomes]
rs6838322	0.88[ASN][1000 genomes]
rs6839087	0.88[ASN][1000 genomes]
rs7434610	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7665348	0.87[ASN][1000 genomes]
rs7678055	0.81[ASN][1000 genomes]
rs7679853	0.86[ASN][1000 genomes]
rs7692210	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9990832	0.88[ASN][1000 genomes]
rs9996030	0.86[ASN][1000 genomes]
rs9997529	0.88[ASN][1000 genomes]
rs9998569	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30833400-30842800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30835200-30842800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:30837200-30843400	Enhancers	Hela-S3	cervix
4	chr4:30838800-30848600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:30839200-30848600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:30840000-30843800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:30840200-30846200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:30840400-30845800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:30840600-30848400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:30841000-30843000	Enhancers	NH-A	brain
11	chr4:30841200-30843400	Enhancers	Fetal Brain Male	brain
12	chr4:30841400-30849800	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:30841600-30842800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:30841800-30844400	Enhancers	Fetal Heart	heart
15	chr4:30842000-30843000	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:30842000-30854400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:30842400-30846000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr4:30842400-30846400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:30842400-30849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:30842400-30855200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:30842600-30845800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr4:30842600-30848400	Weak transcription	Fetal Lung	lung
23	chr4:30842600-30854600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr4:30842600-30855800	Weak transcription	Aorta	Aorta

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