Variant report

Variant	rs7434610
Chromosome Location	chr4:30839793-30839794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10027633	0.85[ASN][1000 genomes]
rs11722640	0.88[ASN][1000 genomes]
rs12331633	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12651441	0.87[ASN][1000 genomes]
rs13108018	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13139390	0.82[ASN][1000 genomes]
rs1374658	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1447365	0.93[ASN][1000 genomes]
rs4235011	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4235012	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4441719	0.88[ASN][1000 genomes]
rs4493494	0.82[EUR][1000 genomes]
rs4527444	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4536889	0.88[ASN][1000 genomes]
rs4586889	0.88[ASN][1000 genomes]
rs4619848	0.80[EUR][1000 genomes]
rs4692105	0.82[ASN][1000 genomes]
rs4692483	0.88[ASN][1000 genomes]
rs4692485	0.84[ASN][1000 genomes]
rs4692487	0.88[ASN][1000 genomes]
rs4692488	0.88[ASN][1000 genomes]
rs4692489	0.87[ASN][1000 genomes]
rs6448727	0.87[ASN][1000 genomes]
rs6819406	0.86[ASN][1000 genomes]
rs6821487	0.84[ASN][1000 genomes]
rs6838322	0.88[ASN][1000 genomes]
rs6839087	0.87[ASN][1000 genomes]
rs7665348	0.86[ASN][1000 genomes]
rs7678055	0.83[ASN][1000 genomes]
rs7679853	0.85[ASN][1000 genomes]
rs7692210	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9990832	0.88[ASN][1000 genomes]
rs9996030	0.86[ASN][1000 genomes]
rs9997529	0.87[ASN][1000 genomes]
rs9998569	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30833400-30842800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:30835200-30842800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:30836600-30842400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:30837200-30841600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:30837200-30841600	Weak transcription	Aorta	Aorta
6	chr4:30837200-30841800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:30837200-30841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:30837200-30843400	Enhancers	Hela-S3	cervix
9	chr4:30837400-30841200	Weak transcription	Right Ventricle	heart
10	chr4:30837800-30840200	Enhancers	NH-A	brain
11	chr4:30838000-30840600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:30838000-30840600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:30838200-30840800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:30838400-30840200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:30838400-30840400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:30838400-30840400	Enhancers	Fetal Stomach	stomach
17	chr4:30838400-30840600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:30838400-30840800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:30838600-30840600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr4:30838600-30840600	Enhancers	Fetal Lung	lung
21	chr4:30838800-30840200	Enhancers	Fetal Brain Male	brain
22	chr4:30838800-30848600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:30839000-30841200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:30839000-30841200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr4:30839000-30841600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:30839000-30842000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:30839200-30841000	Weak transcription	Colon Smooth Muscle	Colon
28	chr4:30839200-30841200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:30839200-30841600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr4:30839200-30848600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:30839400-30841200	Enhancers	Fetal Heart	heart
32	chr4:30839400-30841200	Weak transcription	HSMMtube	muscle
33	chr4:30839400-30841400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr4:30839400-30841800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr4:30839600-30839800	Enhancers	H1 Cell Line	embryonic stem cell
36	chr4:30839600-30839800	Enhancers	Fetal Muscle Leg	muscle
37	chr4:30839600-30840000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr4:30839600-30841200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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