Variant report

Variant	rs6821487
Chromosome Location	chr4:30919004-30919005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:30917786..30919425-chr4:30920654..30922695,2	K562	blood:

Variant related genes	Relation type
ENSG00000169851	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10000401	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10013694	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10027633	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10805300	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10939317	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10939318	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11722640	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11735048	0.97[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12512796	0.81[EUR][1000 genomes]
rs12651441	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13120686	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13127450	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13139390	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13151051	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1447365	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28670870	0.82[EUR][1000 genomes]
rs4075130	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4235011	0.85[ASN][1000 genomes]
rs4235013	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4235014	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4235015	0.83[EUR][1000 genomes]
rs4259023	0.84[EUR][1000 genomes]
rs4260492	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4261943	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4266255	0.84[EUR][1000 genomes]
rs4337695	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4441719	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4469028	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4487300	0.82[EUR][1000 genomes]
rs4491979	0.83[EUR][1000 genomes]
rs4527444	0.85[ASN][1000 genomes]
rs4536889	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4557225	0.84[EUR][1000 genomes]
rs4586889	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4692107	0.82[EUR][1000 genomes]
rs4692483	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4692485	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4692487	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4692488	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4692489	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4692490	0.81[EUR][1000 genomes]
rs5001866	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6448727	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6819406	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6838322	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6839087	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6840698	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6856017	0.90[AFR][1000 genomes]
rs7434610	0.84[ASN][1000 genomes]
rs7658077	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7661924	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7662881	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7665348	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7669015	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7673048	0.92[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7679853	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7683848	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7683968	0.83[EUR][1000 genomes]
rs7696462	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9685207	0.83[EUR][1000 genomes]
rs9990832	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9996030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9997529	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9998569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30914200-30923800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:30914200-30947200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:30914400-30919400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:30914400-30928200	Weak transcription	Fetal Lung	lung
5	chr4:30914400-30940600	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:30917600-30922400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:30918000-30919200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:30918000-30919200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:30918000-30919400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:30918000-30919600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr4:30918600-30921600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr4:30918600-30921800	Weak transcription	Aorta	Aorta
13	chr4:30918600-30922000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:30918600-30925800	Weak transcription	Fetal Intestine Small	intestine
15	chr4:30919000-30920200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:30919000-30920400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links