Variant report

Variant	rs4487300
Chromosome Location	chr4:30908002-30908003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10000401	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10013694	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10021544	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs10027633	0.82[EUR][1000 genomes]
rs10517219	1.00[YRI][hapmap]
rs10805300	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10939317	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10939318	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10939325	0.86[CEU][hapmap];0.89[CHB][hapmap]
rs11722640	0.85[EUR][1000 genomes]
rs11727594	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11735048	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12512796	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13120686	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13127450	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13138590	1.00[YRI][hapmap]
rs13139390	0.81[EUR][1000 genomes]
rs13151051	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28670870	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3775331	1.00[YRI][hapmap]
rs4075130	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4235012	0.86[ASN][1000 genomes]
rs4235013	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4235014	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4235015	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4259023	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4260492	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4261943	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4266255	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4337695	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4358358	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4361347	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs4368569	1.00[YRI][hapmap]
rs4374588	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4380481	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4441719	0.83[EUR][1000 genomes]
rs4466008	1.00[YRI][hapmap]
rs4469028	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4491979	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4536889	0.84[EUR][1000 genomes]
rs4557225	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4585258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4586889	0.83[EUR][1000 genomes]
rs4611883	1.00[YRI][hapmap]
rs4692107	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4692109	0.83[CEU][hapmap];0.85[CHB][hapmap]
rs4692483	0.84[EUR][1000 genomes]
rs4692485	0.83[EUR][1000 genomes]
rs4692487	0.84[EUR][1000 genomes]
rs4692488	0.84[EUR][1000 genomes]
rs4692489	0.83[EUR][1000 genomes]
rs4692490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs5001866	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6448726	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6448727	0.84[EUR][1000 genomes]
rs6448730	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs6812005	1.00[YRI][hapmap]
rs6819406	0.85[EUR][1000 genomes]
rs6821487	0.82[EUR][1000 genomes]
rs6838322	0.80[EUR][1000 genomes]
rs6839087	0.85[EUR][1000 genomes]
rs6840698	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6847642	1.00[YRI][hapmap]
rs7658077	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7661924	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7662881	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7665348	0.81[EUR][1000 genomes]
rs7669015	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7673048	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7678386	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7679853	0.84[EUR][1000 genomes]
rs7683848	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7683968	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7696462	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9291553	1.00[YRI][hapmap]
rs9685207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9990832	0.84[EUR][1000 genomes]
rs9996030	0.83[EUR][1000 genomes]
rs9997116	0.82[EUR][1000 genomes]
rs9997529	1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs9998569	0.83[EUR][1000 genomes]
rs9999771	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30906000-30909000	Weak transcription	Hela-S3	cervix
2	chr4:30907000-30913800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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