Variant report

Variant	rs3775331
Chromosome Location	chr4:30728507-30728508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10006361	0.86[CEU][hapmap]
rs10008728	0.80[CEU][hapmap]
rs10021424	0.87[EUR][1000 genomes]
rs10024115	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1032175	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1032176	0.84[EUR][1000 genomes]
rs10517219	1.00[YRI][hapmap]
rs10939312	0.87[EUR][1000 genomes]
rs13104581	0.84[EUR][1000 genomes]
rs13111136	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13121800	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs13122380	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1348921	0.81[CEU][hapmap]
rs1447364	0.82[CEU][hapmap]
rs1486787	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2121658	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28420079	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2871476	1.00[YRI][hapmap]
rs35428738	0.89[EUR][1000 genomes]
rs4368569	1.00[YRI][hapmap]
rs4380480	0.81[CEU][hapmap]
rs4466008	1.00[YRI][hapmap]
rs4487300	1.00[YRI][hapmap]
rs4505780	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs4585258	1.00[YRI][hapmap]
rs4611883	1.00[YRI][hapmap]
rs4613528	0.89[EUR][1000 genomes]
rs4692104	0.86[EUR][1000 genomes]
rs4692490	1.00[YRI][hapmap]
rs6448719	0.91[EUR][1000 genomes]
rs6448720	0.91[EUR][1000 genomes]
rs6448723	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs6812005	1.00[YRI][hapmap]
rs6814666	0.86[EUR][1000 genomes]
rs6815007	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs6828872	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs6832173	0.89[EUR][1000 genomes]
rs6847642	1.00[YRI][hapmap]
rs6855232	0.89[EUR][1000 genomes]
rs6855570	0.89[EUR][1000 genomes]
rs6858230	0.87[EUR][1000 genomes]
rs7664926	0.89[EUR][1000 genomes]
rs7670155	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7685566	0.91[EUR][1000 genomes]
rs7695188	0.84[EUR][1000 genomes]
rs7695488	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs9291548	0.82[EUR][1000 genomes]
rs9291549	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs9291553	1.00[YRI][hapmap]
rs9997529	1.00[YRI][hapmap]
rs9999290	0.82[CEU][hapmap]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30719000-30729600	Active TSS	Fetal Heart	heart
2	chr4:30723200-30729800	Flanking Active TSS	HUVEC	blood vessel
3	chr4:30724600-30729400	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr4:30724800-30729200	Active TSS	Right Ventricle	heart
5	chr4:30725200-30729400	Active TSS	Stomach Smooth Muscle	stomach
6	chr4:30725600-30729400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:30726200-30729000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:30726200-30729000	Active TSS	Aorta	Aorta
9	chr4:30726200-30729200	Active TSS	Fetal Stomach	stomach
10	chr4:30726200-30729200	Active TSS	NHEK	skin
11	chr4:30726200-30729400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:30726200-30729400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:30726200-30730000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:30726200-30732400	Weak transcription	Left Ventricle	heart
15	chr4:30726200-30738600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:30726400-30728600	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr4:30726400-30729000	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr4:30726800-30740800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:30727400-30729000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:30727400-30736400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr4:30728000-30728600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr4:30728200-30728800	Weak transcription	Brain Anterior Caudate	brain
24	chr4:30728200-30729000	Weak transcription	Brain Angular Gyrus	brain
25	chr4:30728200-30729000	Weak transcription	Hela-S3	cervix
26	chr4:30728200-30730400	Weak transcription	Fetal Brain Female	brain
27	chr4:30728200-30730800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr4:30728200-30745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:30728400-30728600	Enhancers	Colon Smooth Muscle	Colon
30	chr4:30728400-30728600	Enhancers	Rectal Smooth Muscle	rectum
31	chr4:30728400-30728600	Flanking Active TSS	NH-A	brain
32	chr4:30728400-30728800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:30728400-30728800	Weak transcription	HMEC	breast
34	chr4:30728400-30729000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr4:30728400-30729200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr4:30728400-30729400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:30728400-30729400	Enhancers	Fetal Lung	lung
38	chr4:30728400-30730000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr4:30728400-30733400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr4:30728400-30736000	Weak transcription	Fetal Muscle Leg	muscle
41	chr4:30728400-30746200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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