Variant report

Variant	rs1032175
Chromosome Location	chr4:30743161-30743162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10006361	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10008728	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10021424	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10024115	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1032176	0.90[EUR][1000 genomes]
rs10939312	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11727285	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13104581	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13111136	0.90[EUR][1000 genomes]
rs13121800	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13122380	0.87[EUR][1000 genomes]
rs1348921	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1447364	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1486787	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121658	0.86[EUR][1000 genomes]
rs28420079	0.90[EUR][1000 genomes]
rs28716204	0.86[ASN][1000 genomes]
rs35428738	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3775331	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4235010	0.82[ASN][1000 genomes]
rs4368569	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4380480	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4466008	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4498103	0.82[ASN][1000 genomes]
rs4505780	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4557224	0.84[ASN][1000 genomes]
rs4611883	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4613528	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4615135	0.82[ASN][1000 genomes]
rs4995324	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6448719	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6448720	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6448723	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6814666	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6815007	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6827723	0.82[ASN][1000 genomes]
rs6828872	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6832173	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6855232	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6855570	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6856144	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6858230	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7664926	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7670155	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7685283	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7685566	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7695188	0.93[EUR][1000 genomes]
rs7695488	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9291547	0.83[EUR][1000 genomes]
rs9291548	0.88[EUR][1000 genomes]
rs9291549	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9291553	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9999290	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:30728200-30745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:30728400-30746200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:30729000-30748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:30729200-30746200	Weak transcription	NH-A	brain
6	chr4:30730200-30754800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:30732600-30746200	Weak transcription	NHEK	skin
8	chr4:30737200-30746000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:30737400-30746200	Weak transcription	Fetal Stomach	stomach
10	chr4:30737400-30748200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:30737400-30770800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:30737600-30744600	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:30737600-30745600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:30737800-30744400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:30738000-30745200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:30739400-30765000	Weak transcription	Fetal Lung	lung
17	chr4:30739800-30752000	Weak transcription	Aorta	Aorta
18	chr4:30741800-30743200	Weak transcription	Fetal Heart	heart
19	chr4:30742000-30743200	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:30743000-30744000	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links