Variant report

Variant	rs13122380
Chromosome Location	chr4:30733512-30733513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10021424	0.83[EUR][1000 genomes]
rs10024115	0.84[EUR][1000 genomes]
rs1032175	0.87[EUR][1000 genomes]
rs10939312	0.83[EUR][1000 genomes]
rs13111136	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13121800	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1486787	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2121658	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28420079	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35428738	0.85[EUR][1000 genomes]
rs3775331	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4505780	0.83[EUR][1000 genomes]
rs4613528	0.85[EUR][1000 genomes]
rs4692104	0.81[EUR][1000 genomes]
rs6448719	0.87[EUR][1000 genomes]
rs6448720	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6448723	0.83[EUR][1000 genomes]
rs6814666	0.83[EUR][1000 genomes]
rs6815007	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6828872	0.83[EUR][1000 genomes]
rs6832173	0.85[EUR][1000 genomes]
rs6855232	0.85[EUR][1000 genomes]
rs6855570	0.85[EUR][1000 genomes]
rs6858230	0.83[EUR][1000 genomes]
rs7664926	0.85[EUR][1000 genomes]
rs7670155	0.85[EUR][1000 genomes]
rs7685566	0.87[EUR][1000 genomes]
rs7695188	0.89[EUR][1000 genomes]
rs7695488	0.85[EUR][1000 genomes]
rs9291547	0.82[EUR][1000 genomes]
rs9291549	0.83[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30726200-30738600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:30726800-30740800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:30727400-30736400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:30728200-30745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:30728400-30736000	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:30728400-30746200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:30728600-30743000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:30729000-30748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:30729200-30736400	Weak transcription	Fetal Stomach	stomach
11	chr4:30729200-30741600	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:30729200-30746200	Weak transcription	NH-A	brain
13	chr4:30729400-30736400	Weak transcription	Fetal Lung	lung
14	chr4:30729400-30736400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr4:30729400-30740200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:30729400-30741600	Weak transcription	Brain Anterior Caudate	brain
17	chr4:30730200-30754800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:30730600-30734000	Weak transcription	Fetal Heart	heart
19	chr4:30730800-30733600	Weak transcription	Hela-S3	cervix
20	chr4:30730800-30736200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:30732000-30737600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:30732200-30734200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:30732600-30734800	Weak transcription	Esophagus	oesophagus
24	chr4:30732600-30736200	Weak transcription	Aorta	Aorta
25	chr4:30732600-30746200	Weak transcription	NHEK	skin
26	chr4:30733200-30738000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links