Variant report

Variant	rs13111136
Chromosome Location	chr4:30736724-30736725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10021424	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10024115	0.85[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1032175	0.90[EUR][1000 genomes]
rs1032176	0.81[EUR][1000 genomes]
rs10517215	0.83[CHB][hapmap]
rs10939312	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13104581	0.81[EUR][1000 genomes]
rs13121800	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13122380	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1348921	0.88[MEX][hapmap];0.84[TSI][hapmap]
rs1374653	0.83[CHB][hapmap]
rs1486787	0.85[CEU][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2121658	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28420079	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35428738	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3775331	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4380480	0.87[MEX][hapmap];0.84[TSI][hapmap]
rs4505780	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4613528	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6448719	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6448720	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6448723	0.85[CEU][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6814666	0.85[EUR][1000 genomes]
rs6815007	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6828872	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6832173	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6855232	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6855570	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6858230	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7664926	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7670155	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7685566	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7695188	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7695488	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9291547	0.87[GIH][hapmap];0.83[EUR][1000 genomes]
rs9291549	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30726200-30738600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:30726200-30757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:30726800-30740800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:30728200-30745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:30728400-30746200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:30728600-30743000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:30729000-30748200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:30729200-30741600	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:30729200-30746200	Weak transcription	NH-A	brain
10	chr4:30729400-30740200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:30729400-30741600	Weak transcription	Brain Anterior Caudate	brain
12	chr4:30730200-30754800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:30732000-30737600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:30732600-30746200	Weak transcription	NHEK	skin
15	chr4:30733200-30738000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:30734600-30739000	Weak transcription	Fetal Heart	heart
17	chr4:30736000-30737600	Strong transcription	Fetal Muscle Leg	muscle
18	chr4:30736200-30737200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:30736200-30737600	Strong transcription	Aorta	Aorta
20	chr4:30736400-30737400	Strong transcription	Fetal Muscle Trunk	muscle
21	chr4:30736400-30737400	Strong transcription	Fetal Stomach	stomach
22	chr4:30736400-30737400	Strong transcription	Stomach Smooth Muscle	stomach
23	chr4:30736400-30738200	Strong transcription	Fetal Lung	lung
24	chr4:30736600-30737800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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