Variant report

Variant	rs1374653
Chromosome Location	chr4:30789609-30789610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10003247	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10003467	0.94[CHB][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.86[TSI][hapmap];0.90[ASN][1000 genomes]
rs1021263	0.81[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1032174	0.84[CEU][hapmap];0.94[CHB][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes]
rs1047012	0.88[CHB][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap]
rs10517215	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13111136	0.83[CHB][hapmap]
rs1374656	0.91[CEU][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1447361	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1447363	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs1447366	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1447367	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1447369	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1447374	0.91[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16867968	0.90[ASN][1000 genomes]
rs16884045	0.83[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs16884125	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2121657	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2166716	0.83[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2166717	0.84[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2310224	1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28420079	0.83[CHB][hapmap]
rs28587843	0.90[ASN][1000 genomes]
rs34659374	0.81[ASN][1000 genomes]
rs35154721	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35977739	0.90[ASN][1000 genomes]
rs3756025	0.94[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3775330	0.94[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs3775332	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs3775333	0.80[ASN][1000 genomes]
rs58200645	0.85[ASN][1000 genomes]
rs60684999	0.81[ASN][1000 genomes]
rs61796161	0.80[ASN][1000 genomes]
rs61796164	0.81[ASN][1000 genomes]
rs6448722	0.90[ASN][1000 genomes]
rs6820105	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6820251	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73117597	0.85[ASN][1000 genomes]
rs73119613	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73121566	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73121588	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9291546	0.82[CHB][hapmap]
rs977931	0.94[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30779200-30790600	Weak transcription	Fetal Lung	lung
2	chr4:30784600-30790600	Weak transcription	Aorta	Aorta
3	chr4:30785400-30790800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:30785600-30790200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:30785600-30790400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:30785600-30790800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:30785800-30789800	Weak transcription	Fetal Heart	heart
8	chr4:30785800-30790600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:30786000-30790600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:30786000-30790800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:30788000-30790600	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:30788200-30790400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:30788200-30790800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr4:30788200-30791000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:30788400-30790200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:30788400-30790800	Weak transcription	Ovary	ovary
17	chr4:30788400-30791200	Weak transcription	Fetal Stomach	stomach
18	chr4:30788600-30790600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:30789600-30789800	Enhancers	Fetal Intestine Small	intestine

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